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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015864883.1_cds_XP_016516141.1_28414
CDS Infomation

[gene=LOC107832780] [db_xref=GeneID:107832780] [protein=hippocampus abundant transcript-like protein 1] [protein_id=XP_016516141.1] [location=complement(join(15612..15713,15799..15869,15955..16033,16388..16429,16538..16591,17366..17398,17483..17563,17885..17971,18349..18424,18574..18746,18838..18960,19053..19165,19343..19454,20605..20784))] [gbkey=CDS]
Sequence

ATGGGATTTGAGAGTATGAAGAAATTGAAGCCTTTGTTGCATTTGTTGTTGCCACTATGT
ATACACTGGATTGCTGAAGAGATGACAGTTTCAGTGCTTGTTGATGTTACAACTAGTGCT
CTTTGTCCTGGCAATTCCACTTGTTCTGAAGCCATTTACATCAACGGTGTTCAACAAACA
GTTGTTGGAATATTCAAGATGCTTGTCCTTCCTATCCTAGGCCAGCTTTCAGATGAGTAT
GGGCGTAAACCGCTTCTTCTCCTCACCCTATCTACAACAATTATTCCTTTTGGTTTACTC
ACCATAAATAAGTCAAAGGGATTTGTCTATGCTTATTATGTCCTGCGGACGGTTTCTTAT
ATCATAAGCCAAGGGAGCATTTTCTGCATCTCTGTTGCTTATGCGGCTGATGTTGTTGAC
GAGAGTAGTAGAGCTGCAGTTTTTAGTTGGATTACGGGACTTTTTTCTGCATCCCATGTT
ATGGGGAATGTCCTAGCCCGTTTTCTTCCTGTGGGCTACATTTTTCAGGTTTCAATAGGC
CTCTTGATCTTTGTTCCTGTTTATATGATACTGTTTCTAGAAGAGACTGTAAGTCCAAAA
ACAGAGGTGAACCAAAGTTCGACAGTAAAGAGCAAGGCATTGAAGGTTGTTCAGGAACGA
TATAACTCGATGAGATATGCTGCAAATATTGTCACTAGCAGTCCAACACTGAAGTGCATT
TCTCTCGTTTCTTTCTTCTATGAGTTGGGAATGTCCGGCATCAGCAGCGTTTTACTGTAC
TATCTGAAATCAGCTTTTGGCTTCAATAAGAATCAGTTCTCAGAAATCTTGATGATGGTG
GGAGTAGGTTCTATAGTCTCACAGATTCTGGTGCTTCCTCTTATCAATCCTCTGTTTGGG
GAGAAAGTGATACTTTGCATGGCTTTGCTTTCTTCAATAGCCTATGCAATGCTTTATGGA
TTAGCATGGGCACCTTGGGTGCCATATTTAAGTGCTTCTTTTGGGGTCATCTACATCCTT
GTTAAACCCTCTACTTATGCTGTTATATCCAAATCGGCACTTTCAGCAGATCAGGGCAAA
GCACAGGGATTTGTTGCTGGCGTTCAATCAGTCGCGAGTTTGTTATCTCCTATTGTGATG
AGTCCATTGACATCGTGGTTTTTGTCTCGTGATGCACCTTTTAACTGCAAAGGATTTAGT
ATACTTTGTGCTTCTTTATGCATGATGGTTTCGCTTTATTATGCTTGCATGCTTAAAGTA
GAGGTTCCCTCAAAGAAGACCTTCGACGAAAATGCAGAGAATATTGAAGCACCACTTTTG
GCATGA

Peptide Sequence

PEP ID

XP_016516141.1
PEP Infomation

PREDICTED: hippocampus abundant transcript-like protein 1 [Nicotiana tabacum]
Sequence

MGFESMKKLKPLLHLLLPLCIHWIAEEMTVSVLVDVTTSALCPGNSTCSEAIYINGVQQT
VVGIFKMLVLPILGQLSDEYGRKPLLLLTLSTTIIPFGLLTINKSKGFVYAYYVLRTVSY
IISQGSIFCISVAYAADVVDESSRAAVFSWITGLFSASHVMGNVLARFLPVGYIFQVSIG
LLIFVPVYMILFLEETVSPKTEVNQSSTVKSKALKVVQERYNSMRYAANIVTSSPTLKCI
SLVSFFYELGMSGISSVLLYYLKSAFGFNKNQFSEILMMVGVGSIVSQILVLPLINPLFG
EKVILCMALLSSIAYAMLYGLAWAPWVPYLSASFGVIYILVKPSTYAVISKSALSADQGK
AQGFVAGVQSVASLLSPIVMSPLTSWFLSRDAPFNCKGFSILCASLCMMVSLYYACMLKV
EVPSKKTFDENAENIEAPLLA

Transcript Sequence

Gene sequence data has not been registered.